Precompiled or prepackaged versions of OpenMS, PyProphet and msproteomicstools are readily available for most supported platforms.
Instructions for compilation and installation can be obtained from the OpenMS documentation.
PyProphet requires Python 2.7 or Python 3. Windows users should install Anaconda. Mac and Linux users should be able to install PyProphet directly from GitHub. It is strongly recommended to install PyProphet within a virtualenv.
# Install dependencies pip install numpy scipy scikit-learn pandas numexpr statsmodels Click matplotlib seaborn # Install PyProphet release version pip install pyprophet # Alternative: Install PyProphet development version pip install git+https://github.com/PyProphet/[email protected]
msproteomicstools & TRIC¶
msproteomicstools requires Python 2.7 and can be installed through
pip. On Microsoft Windows you will first have to install Python (the easiest way to do this is to download Anaconda). You can then install msproteomicstools through PyPI:
pip install numpy pip install msproteomicstools
You can alternatively download the msproteomicstools release directly from PyPI. To obtain the latest development version, please download the code from GitHub. If you are using Microsoft Windows and Anaconda, it is possible that BioPython does not properly install and you may have to install it through Anaconda:
conda install biopython